Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015818710.1_cds_XP_016499749.1_13637
CDS Infomation

[gene=LOC107818276] [db_xref=GeneID:107818276] [protein=protein HIRA-like isoform X2] [protein_id=XP_016499749.1] [location=join(12373..12549,12637..13034,13155..14169,15693..15894,16191..16431,16782..16904,17508..17625,18745..19245)] [gbkey=CDS]
Sequence

ATGAGCAATGGTATATGCACTGCTGTTCTGAGGGGTCACTCTAGTCTTGTTAAAGGCGTC
ACATGGGATCCGATTGGTTCATTTATAGCTAGTCAATCAGATGATAAGACTGTCATCATT
TGGCGAACAAGTGACTGGAGCCTTGCTCATAGAACTGAAGGTCATTGGGCAAAATCTCTT
GGGTCAACCTTCTTTAGGCGGCTTGGATGGTCACCCTGTGGACACTATATAACTACTACT
CATGGTTTTCAAAAGCCTAGGCATTCTGCTCCTGTTCTGGAGAGAGGGGAATGGTCTGCC
ACTTTTGACTTCTTAGGGCACAATGCTCCTGTTATTGTGGTTAAGTTTAATCATTCTATG
TTTCGGAGGAATTTGGCTAATGCGCAGGAAGTGAAAAATGCATCTCTTGGATGGTCAAAT
GGTTCTTCAAAAAATGGAGGAAAAGAGTCCCAACCCTACAATGTTATTGCTATAGGAAGT
CAAGATCGCACTATAACTGTGTGGACAACAGCAAGTCCACGTCCTCTTTTTGTCGCTAAA
CATTTCTTTTCTCAAAGTGTTGTGGATTTATCATGGAGCCCTGATGGATATTCACTCTTT
GCATGTTCTTTGGATGGAAGTGTAGCCACTTTCCATTTTGATGGGAATGAACTAGGTGTT
CGGTTATCTGATGCTGAATTAGAGGAGTTGAAGAGAAGCCGCTATGGTGATGTTAGAGGC
CGACAAGCAAATTTAGCCGAAAGTCCAGCTCAACTATTACTTGAAGCAGCAGCTGCAAAG
CAAAGTTCAAGCAAAAAACTAACTAAGGATCTTACACAAGTTCAAGCAACCTCAAAATCT
TCTGTTGATTTGGTGAGTGTGGTGAAGATTCCTAAACCGCAATCTGATAACGGGAAAAAG
ACCGAAGGAGTTAGCAGTGATAGCTTAAATAAACCCGCAGCCTCTACCCGCATGTCAAGT
CCCGTGAAGCAAAGAGAGTACAGACGGCCCGATGGTCGAAAGAGGATAATTCCAGAAGCA
GTTGGTGTGCCTACCCAGCAGGAGAACATCTCCGGAATTCCTCAATCTCCTGCTATTGAA
TTCCGTAATAAGACAGTGGATCAGAGGAAAGATGAGAATGGTATGGTACTGTCCGATGCA
AGTGTTAGGGAAGGATTTGTAAGGAAAACAGTTGGTCTCAGTGCTGACCAAAAGGAGCGC
TCAGGTCTAACTGCCAGAGCTAGCATCAGTGAGAGCCTCATCATTGAGAAGATTTCGCCT
TCTGTAGGCAAGGATGGAAGCATCACCATAGAACAGATGGGAATTGTCAAGGATCCGCCT
CATTTGGGTTCTGGTGGTACTCTTTTAATCAGGGTTTTTGATAATAAAGAAGGGGAGGGC
ACTGGTCCAATTTGCTTAGAGGCTCAACCCAGAGAACAAGCTGCTAATGATATTTTAGGG
GCAGGAAATTCATTTGTAATGAAGGAAACTGAGATACTTTGTACAAGGGGGAGTCAAACC
CTCTGGTCTGACCGGATTTCTGGAAAAGTTACTGTTTTGGCTGGAAATGCCAACTTTTGG
GCTGTGGGATGTGAAGACGGATGCGTTCAGATTTATACAAAGTGTGGACGACGTGCCATG
CCAACCATGATGATGGGATCTGCTGCAGTGTTTGTTGATTGTGATGAATCTTGGAAGTTT
TTGCTTGTCACAAGGAAAGGGTCATTTTATCTATGGGATCTATTTAATCGGAAGTGTCTC
CTTCAAGACTCTTTGGCTTCCCTTTTATCTTCAGATCCAAAGGCGAATGCAGGCACAATC
AAAGTGATATCAGCAAAATTATCAGCGTCTGGTTTTCCTCTTGTTGTCCTGGCCACACGG
CATGCATACCTCTTTGATATGAGCCTCATGTGCTGGCTGAGGGTTGCAGATGATTGTTTT
CCTGCATCGAATTTTTCAAGCTCCTGGAGTTCGGGCTCATTGCATGGTGGTGAGCTAGCG
GCATTGCAGGTGGATGTTAGGAAGTTCCTGGCTAGAAGACCCGGTTGGAGCAGAGTCACA
GATGATGGGGTACAAACACGTGCTCATTTGGAGGCTCAGTTGGCTTCTGCTCTTGCTTTG
AAGTCTCCTAGTGAATATCGTCAATGCCTTTTATCCTACATCCGGTTTTTAGCAAGAGAG
GCAGATGAGTCACGCTTGAGAGAAGTTTGTGAGAGCTTTCTTGGGCCTCCCACAGGGATG
GCTGAGGCTGCATCCTCTGATTCAAATAAAACTGCTTGGGACCCTTGTGTACTTGGTTTG
AAAAAACACAGACTCCTTAGAGAAGACATACTTCCAGCAATGGCATCGAATAGGAAAGTA
CAGCGGCTGCTCAACGAGTTCATGGATCTCCTCTCAGAATATGACGACATGAGTCCTGAA
CAAAACAATGTCGGGACCACCACATCAACTGAAATGAATCTTGAACAGACCAATGTTGCA
ACCACTACATCTTTTCCGGCTACAGATAAGATGGATACCGATGTCCCTATGACTCAAAGA
ACAGTTCCACAGACACCAATAACTAACCCAACACCTTCCACGTCTATAAATGACCGAGGG
ACTCCTGCTCGTCCTGCAGTACAATCAAGTGATCATGTTGAGCCTTGTATACTTTTGAAA
GAAACAATGGACTCGGATCAACAAGAAACTGATGAAGCTAAATCTGTACCACCGCCAACA
GATCAAATGAAATTGGATGCACCTGCATCAGTTGAATCGGAACCATCTCCTTCACCAAAG
GAGAAGGTTTCTTGA

Peptide Sequence

PEP ID

XP_016499749.1
PEP Infomation

PREDICTED: protein HIRA-like isoform X2 [Nicotiana tabacum]
Sequence

MSNGICTAVLRGHSSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTEGHWAKSL
GSTFFRRLGWSPCGHYITTTHGFQKPRHSAPVLERGEWSATFDFLGHNAPVIVVKFNHSM
FRRNLANAQEVKNASLGWSNGSSKNGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAK
HFFSQSVVDLSWSPDGYSLFACSLDGSVATFHFDGNELGVRLSDAELEELKRSRYGDVRG
RQANLAESPAQLLLEAAAAKQSSSKKLTKDLTQVQATSKSSVDLVSVVKIPKPQSDNGKK
TEGVSSDSLNKPAASTRMSSPVKQREYRRPDGRKRIIPEAVGVPTQQENISGIPQSPAIE
FRNKTVDQRKDENGMVLSDASVREGFVRKTVGLSADQKERSGLTARASISESLIIEKISP
SVGKDGSITIEQMGIVKDPPHLGSGGTLLIRVFDNKEGEGTGPICLEAQPREQAANDILG
AGNSFVMKETEILCTRGSQTLWSDRISGKVTVLAGNANFWAVGCEDGCVQIYTKCGRRAM
PTMMMGSAAVFVDCDESWKFLLVTRKGSFYLWDLFNRKCLLQDSLASLLSSDPKANAGTI
KVISAKLSASGFPLVVLATRHAYLFDMSLMCWLRVADDCFPASNFSSSWSSGSLHGGELA
ALQVDVRKFLARRPGWSRVTDDGVQTRAHLEAQLASALALKSPSEYRQCLLSYIRFLARE
ADESRLREVCESFLGPPTGMAEAASSDSNKTAWDPCVLGLKKHRLLREDILPAMASNRKV
QRLLNEFMDLLSEYDDMSPEQNNVGTTTSTEMNLEQTNVATTTSFPATDKMDTDVPMTQR
TVPQTPITNPTPSTSINDRGTPARPAVQSSDHVEPCILLKETMDSDQQETDEAKSVPPPT
DQMKLDAPASVESEPSPSPKEKVS

Transcript Sequence

Gene sequence data has not been registered.